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Updated July 2013Written by Gracen Brilmyer
LEICA APPLICATION SUITE V 4.2
IMAGING MANUAL
The Field Museum of Natural History — Moreau Lab (www.moreaulab.org)
for high-resolution specimen image stacking
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Sommario

Pagina 1 - IMAGING MANUAL

Updated July 2013Written by Gracen BrilmyerLEICA APPLICATION SUITE V 4.2 IMAGING MANUALThe Field Museum of Natural History — Moreau Lab (www.moreaulab

Pagina 2 - ACKNOWLEDGMENTS

2. BEFORE YOU BEGINA Log on to computer using FM\ log-inB If you don’t already have one, create a new user folder in E:\User Important: All informati

Pagina 3 - TABLE OF CONTENTS

3. INITIAL SETUPA Open LAS V4.2 1 Confirm Hardware Setup: [TAB] Setup → [SECTION] Microscope Configuration 4. ACQUIRING IMAGESA Prepare specimen Pi

Pagina 4 - GETTING STARTED

D Adjustments - [TAB] Acquire → [SUBTAB] Camera → [SECTION] Exposure Adjust 1 If using, pull the Dome Illuminator to the “down” position 2 Set the s

Pagina 5 - TO COMPUTER

2 [TAB] Acquire → [SUBTAB] Z → [SECTION] Options a Check the following boxes (if not already checked): Create Multifocus after stack acquire

Pagina 6 - QUICK WORKFLOW

Background: Out of FocusBackground: NoneB [TAB] Process → [SUBTAB] Z → [SECTION] Montage Enhance Choose options in this section as needed (see Suggest

Pagina 7

Note: At any step in the processing, go to [TAB] Process → [SUBTAB] Z → [SECTION] Undo/Redo to step back or forward in the editing process. Keep in mi

Pagina 8 - 1. EQUIPMENT

B Montage Enhancing — [TAB] Process → [SUBTAB] Enhance → [SECTION] Levels 1 Minor adjustments can be made in this section, such as increasing black

Pagina 9

B Delete the individual images - [TAB] Browse → [SUBTAB] Browse [SECTION] Navigator — since the final montage has been exported, the individual images

Pagina 11 - 4. ACQUIRING IMAGES

A. SPECIMEN POSITIONINGThe following are standard imaging positions for insect specimens (particularly ants). All specimens are imaged using a 60% gra

Pagina 12 - Too many steps

The Moreau Lab would like to thank Dr. Brian Fisher and AntWeb.org for their helpful advice as well as for sharing their imaging manual and equipment

Pagina 13 - 5. PROCESSING (OPTIONAL)

3 Head The clypeus and top of the head should be in the same plane of focus. If eyes are present, the same amount of each eye should visible. When

Pagina 14 - Patches of specimen

B. CHOOSING LIGHTING1 For most specimens, the Dome Illuminator should work great: Illuminates specimen from all angles, and can focus lighting on eith

Pagina 15 - (OPTIONAL)

C. EXPOSURE (OPTIONAL)To check if any parts of your specimen are under- or over-exposed go to:[TAB] Acquire → [SUBTAB] Camera → [SECTION] DFC450 - Las

Pagina 16 - 7. EXPORTING & FINISHING

D. WHITE BALANCE (OPTIONAL)1 Once your lighting is set, place a white sheet of paper on the microscope stage. Click the “Automatic white balance on wh

Pagina 17

E. STANDARD SETTINGS1 Hardware Setup: [TAB] Setup → [SECTION] Microscope Configuration Optics Carrier Icon - should see used Optics Carrier used liste

Pagina 18 - APPENDIX

F. NAMING PROTOCOLS1 Ants: FMNHINS1234567_(image view)_Genus_sp_(type status)_(additional shot number).tif Final file name for images of ants should i

Pagina 19 - A. SPECIMEN POSITIONING

o Olympus Q Color OQCcom – Olympus Q Color camera attached to Olympus compound scope OQCste - Olympus Q Color camera attached to Olym

Pagina 20

G. SCALE BAR SETTINGSThe standard scale bar setting for Insect images are as follows: Mode: User Length Style: Horizontal End Bar: None Size: 0.1m

Pagina 21 - B. CHOOSING LIGHTING

H. EXACT EQUIPMENTAPPENDIXComputerShuttle PC Computer Econ Version 1080p LED full DH Monitors (x2)Camera & ColumnVideo Objective 0.63xNo : 1044736

Pagina 22 - C. EXPOSURE (OPTIONAL)

First time logging in to computer iQuick Workflow (for experienced users) ii1 Equipment 1 A Parts B Tools C How to change the Objective D H

Pagina 24 - E. STANDARD SETTINGS

FIRST TIME LOGGING IN TO COMPUTERIf you are a brand new user to this computer, you will need to follow the following steps to ensure the Leica Applica

Pagina 25 - F. NAMING PROTOCOLS

1 Log on to computer using FM\ log-in2 Open user folder on E:\User3 Choose and Optics Carrier and lens (confirm in Hardware Configuration)4 Open LAS V4.

Pagina 26

IMAGING

Pagina 27 - G. SCALE BAR SETTINGS

1. EQUIPMENTA Leica DFC450 Camera with Video Objective 0.63xB Optics Carrier (Z6 or Z16) C Iris D ZoomE Lens (Objectives: 0.5x, 1.0x, and 2.0x)F Go

Pagina 28 - H. EXACT EQUIPMENT

HOW TO CHANGE LENSES (0.5x, 1.0x, 2.0x)1 If Dome Light is attached, first remove it (see How to change Dome Illuminator below)2 Make sure not to touch

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